2IA1

Crystal structure of protein BH3703 from Bacillus halodurans, Pfam DUF600


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52982.0 M (NH4)2SO4, Tris, 0.2 M LiSO4, 10% Ethylene Glycol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.0459.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.385α = 90
b = 81.448β = 90
c = 91.135γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42006-07-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X4A0.9793NSLSX4A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5960.7599.70.0420.03213.27.87114171141
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.591.661000.6950.542.847.77049

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.5960.757105971059359299.230.1730.1730.1720.192RANDOM33.363
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.22-1.241.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.687
r_dihedral_angle_3_deg13.628
r_dihedral_angle_4_deg8.646
r_dihedral_angle_1_deg7.14
r_scangle_it4.019
r_scbond_it2.76
r_mcangle_it1.708
r_angle_refined_deg1.569
r_mcbond_it1.124
r_nbtor_refined0.314
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.687
r_dihedral_angle_3_deg13.628
r_dihedral_angle_4_deg8.646
r_dihedral_angle_1_deg7.14
r_scangle_it4.019
r_scbond_it2.76
r_mcangle_it1.708
r_angle_refined_deg1.569
r_mcbond_it1.124
r_nbtor_refined0.314
r_symmetry_vdw_refined0.221
r_nbd_refined0.217
r_symmetry_hbond_refined0.199
r_xyhbond_nbd_refined0.145
r_chiral_restr0.124
r_bond_refined_d0.019
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2942
Nucleic Acid Atoms
Solvent Atoms439
Heterogen Atoms17

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXphasing
REFMACrefinement
PDB_EXTRACTdata extraction
CBASSdata collection
HKL-2000data reduction
SHELXDphasing
SHELXEmodel building