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Structure of SSO1404, a predicted DNA repair-associated protein from Sulfolobus solfataricus P2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 Crystallized in 0.2M Na iodide, 20% PEG3350, 2% isopropanol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.95 36.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.277 α = 90 b = 64.277 β = 90 c = 39.529 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD SBC-3 Mirrors 2006-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97940 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 50 99.5 0.052 63.9 11.7 12619 12619 27.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.65 96.4 0.309 8.2 10.3 1219
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.59 24.94 11992 11992 610 99.9 0.18972 0.18972 0.18783 0.189 0.22708 0.2288 RANDOM 20.862
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.23 0.46 -0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.503 r_dihedral_angle_4_deg 20.091 r_dihedral_angle_3_deg 15.235 r_dihedral_angle_1_deg 5.524 r_scangle_it 4.571 r_scbond_it 3.27 r_angle_refined_deg 1.692 r_mcangle_it 1.646 r_mcbond_it 1.41 r_symmetry_hbond_refined 0.335
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.503 r_dihedral_angle_4_deg 20.091 r_dihedral_angle_3_deg 15.235 r_dihedral_angle_1_deg 5.524 r_scangle_it 4.571 r_scbond_it 3.27 r_angle_refined_deg 1.692 r_mcangle_it 1.646 r_mcbond_it 1.41 r_symmetry_hbond_refined 0.335 r_nbtor_refined 0.312 r_nbd_refined 0.215 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.178 r_chiral_restr 0.112 r_bond_refined_d 0.016 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 730 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing ARP/wARP model building RESOLVE phasing CCP4 phasing O model building Coot model building