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Crystal structure of a Conserved Protein of Unknown Function from Sulfolobus solfataricus P2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 283 25% PEG3350,
0.2M MgCl2,
0.1M BisTris,
2% Tacsimate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 1.98 37.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.849 α = 90 b = 84.918 β = 90 c = 108.513 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirror 2006-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97915 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 27.92 99.8 0.086 28.98 7 80005 80005 18.25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 100 0.492 3.7 6.7 5265
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 27.92 75708 75708 4013 99.06 0.183 0.183 0.18066 0.1797 0.22744 0.2257 RANDOM 20.114
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.371 r_dihedral_angle_4_deg 16.438 r_dihedral_angle_3_deg 14.033 r_dihedral_angle_1_deg 5.871 r_scangle_it 4.582 r_scbond_it 3.097 r_mcangle_it 1.818 r_angle_refined_deg 1.533 r_mcbond_it 1.194 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.371 r_dihedral_angle_4_deg 16.438 r_dihedral_angle_3_deg 14.033 r_dihedral_angle_1_deg 5.871 r_scangle_it 4.582 r_scbond_it 3.097 r_mcangle_it 1.818 r_angle_refined_deg 1.533 r_mcbond_it 1.194 r_nbtor_refined 0.311 r_symmetry_hbond_refined 0.222 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.213 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.119 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5997 Nucleic Acid Atoms Solvent Atoms 786 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building