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Structure of Protein of Unknown Function ATU0120 from Agrobacterium tumefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 0.2 M calcium chloride, 20% PEG 3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.16 42.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.49 α = 90 b = 101.193 β = 90 c = 103.656 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97929 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 36.9 99.9 0.127 25.1 13.7 42671 42671 28.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.79 99.1 0.85 1.95 7 2971
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 37 42451 42451 2138 99.34 0.1676 0.1676 0.166 0.165 0.1992 0.1977 RANDOM 17.555
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.02 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.416 r_dihedral_angle_4_deg 21.695 r_dihedral_angle_3_deg 13.902 r_dihedral_angle_1_deg 4.789 r_scangle_it 3.292 r_scbond_it 2.274 r_angle_refined_deg 1.413 r_mcangle_it 1.356 r_mcbond_it 0.938 r_symmetry_hbond_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.416 r_dihedral_angle_4_deg 21.695 r_dihedral_angle_3_deg 13.902 r_dihedral_angle_1_deg 4.789 r_scangle_it 3.292 r_scbond_it 2.274 r_angle_refined_deg 1.413 r_mcangle_it 1.356 r_mcbond_it 0.938 r_symmetry_hbond_refined 0.319 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.277 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.182 r_metal_ion_refined 0.161 r_chiral_restr 0.108 r_symmetry_metal_ion_refined 0.091 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2909 Nucleic Acid Atoms Solvent Atoms 454 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing