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Receiver domain from Myxococcus xanthus social motility protein FrzS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GKG pdb entry 2gkg
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 PEG 3350, NaCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.27 45.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.479 α = 90 b = 142.479 β = 90 c = 37.42 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.116 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 98.5 6.8 1.9 30067 30067 25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 98.7 0.64 1.6 1.7 4230
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2gkg 1.9 20 30067 30067 1518 98.5 0.22167 0.21991 0.25369 0.3026 RANDOM 25.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.17 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.555 r_dihedral_angle_4_deg 20.105 r_dihedral_angle_3_deg 10.971 r_dihedral_angle_1_deg 4.807 r_angle_refined_deg 0.826 r_scangle_it 0.674 r_angle_other_deg 0.671 r_scbond_it 0.414 r_mcangle_it 0.316 r_mcbond_it 0.185
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.555 r_dihedral_angle_4_deg 20.105 r_dihedral_angle_3_deg 10.971 r_dihedral_angle_1_deg 4.807 r_angle_refined_deg 0.826 r_scangle_it 0.674 r_angle_other_deg 0.671 r_scbond_it 0.414 r_mcangle_it 0.316 r_mcbond_it 0.185 r_nbd_refined 0.179 r_nbtor_refined 0.152 r_nbd_other 0.148 r_symmetry_vdw_other 0.136 r_symmetry_hbond_refined 0.103 r_xyhbond_nbd_refined 0.102 r_symmetry_vdw_refined 0.091 r_nbtor_other 0.075 r_chiral_restr 0.048 r_mcbond_other 0.025 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2666 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction CCP4 data scaling EPMR phasing