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The crystal structure of OspA mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB ENTRY 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 34% PEG400, 0.1M Tris-HCl, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 46.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.783 α = 90 b = 53.84 β = 99.32 c = 65.495 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC 2006-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9791 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 95.2 0.071 15.59 2.3 166604 70928
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.24 91.6 0.265 2.43 1.8 6771
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2G8C 1.2 20 68343 68343 3599 96.51 0.14945 0.14945 0.14806 0.1564 0.17599 0.1874 RANDOM 10.584
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.29 0.87 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.127 r_dihedral_angle_3_deg 10.648 r_dihedral_angle_4_deg 9.641 r_dihedral_angle_1_deg 5.834 r_sphericity_free 4.664 r_scangle_it 4.161 r_scbond_it 3.077 r_sphericity_bonded 2.321 r_mcangle_it 1.983 r_mcbond_it 1.662
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.127 r_dihedral_angle_3_deg 10.648 r_dihedral_angle_4_deg 9.641 r_dihedral_angle_1_deg 5.834 r_sphericity_free 4.664 r_scangle_it 4.161 r_scbond_it 3.077 r_sphericity_bonded 2.321 r_mcangle_it 1.983 r_mcbond_it 1.662 r_angle_refined_deg 1.397 r_rigid_bond_restr 1.338 r_angle_other_deg 0.743 r_mcbond_other 0.478 r_symmetry_vdw_other 0.23 r_nbd_refined 0.198 r_nbd_other 0.183 r_nbtor_refined 0.159 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.148 r_symmetry_vdw_refined 0.144 r_chiral_restr 0.086 r_nbtor_other 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1863 Nucleic Acid Atoms Solvent Atoms 599 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing