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Structure of small Toprim domain-containing protein from B. stearothermophilus in complex with Mg2+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 100mM MES pH 6.5, 26% PEG3350, 18% glycerol, soaking in 25mM Magnesium Chloride, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 1.86 33.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.667 α = 90 b = 73.031 β = 90 c = 114.922 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2006-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.979 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99.4 0.048 27.7 6.5 38487 38256 19.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 96.6 0.379 2.3 4.3 3622
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 25.9 36143 35991 1903 99.58 0.17322 0.17135 0.1733 0.20799 0.2108 RANDOM 21.241
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 -0.58 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.713 r_dihedral_angle_4_deg 14.972 r_dihedral_angle_3_deg 13.35 r_dihedral_angle_1_deg 4.9 r_scangle_it 2.731 r_scbond_it 1.829 r_angle_refined_deg 1.406 r_mcangle_it 1.044 r_mcbond_it 0.695 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.713 r_dihedral_angle_4_deg 14.972 r_dihedral_angle_3_deg 13.35 r_dihedral_angle_1_deg 4.9 r_scangle_it 2.731 r_scbond_it 1.829 r_angle_refined_deg 1.406 r_mcangle_it 1.044 r_mcbond_it 0.695 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.202 r_chiral_restr 0.155 r_xyhbond_nbd_refined 0.141 r_symmetry_hbond_refined 0.121 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2813 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling