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Crystal structure of Cyclin K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 Ammonium sulfate, PEG 400, HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.36 40.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.766 α = 90 b = 69.186 β = 93.3 c = 50.504 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MONOCHROMATOR 2005-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97930 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 25 99.9 0.071 32.28 10.6 46197 46197
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.54 99.3 0.217 6.5 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.5 23.69 42446 2338 99.9 0.185 0.183 0.1814 0.218 0.2166 RANDOM 28.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.754 r_dihedral_angle_4_deg 13.491 r_dihedral_angle_3_deg 13.276 r_scangle_it 8.346 r_scbond_it 5.678 r_dihedral_angle_1_deg 5.512 r_mcangle_it 4.033 r_mcbond_it 2.884 r_angle_refined_deg 1.982 r_nbtor_refined 0.325
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.754 r_dihedral_angle_4_deg 13.491 r_dihedral_angle_3_deg 13.276 r_scangle_it 8.346 r_scbond_it 5.678 r_dihedral_angle_1_deg 5.512 r_mcangle_it 4.033 r_mcbond_it 2.884 r_angle_refined_deg 1.982 r_nbtor_refined 0.325 r_symmetry_vdw_refined 0.29 r_nbd_refined 0.283 r_symmetry_hbond_refined 0.273 r_xyhbond_nbd_refined 0.259 r_chiral_restr 0.129 r_bond_refined_d 0.022 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2109 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms
Software Software Software Name Purpose SOLVE phasing REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling