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PDZ domain of EpsC from Vibrio cholerae, residues 204-305
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 10 294 2.4M ammonium sulfate, 0.2M Li sulfate, 0.1M CAPS pH 10.0, vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.08 40.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.244 α = 90 b = 25.499 β = 125.38 c = 87.654 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2005-08-10 M SINGLE WAVELENGTH 2 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.979124 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.94 50 97.7 0.093 7 3.3 15285
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.94 2.01 89.4 0.278 2.9 1370
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.92 50 15282 15282 759 96.94 0.179 0.179 0.176 0.1768 0.236 0.2347 RANDOM 19.569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.34 -0.07 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.606 r_dihedral_angle_4_deg 20.766 r_dihedral_angle_3_deg 15.479 r_dihedral_angle_1_deg 6.477 r_scangle_it 6.312 r_scbond_it 5.234 r_mcangle_it 3.8 r_mcbond_it 2.88 r_angle_refined_deg 1.403 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.606 r_dihedral_angle_4_deg 20.766 r_dihedral_angle_3_deg 15.479 r_dihedral_angle_1_deg 6.477 r_scangle_it 6.312 r_scbond_it 5.234 r_mcangle_it 3.8 r_mcbond_it 2.88 r_angle_refined_deg 1.403 r_nbtor_refined 0.311 r_nbd_refined 0.254 r_symmetry_vdw_refined 0.232 r_xyhbond_nbd_refined 0.212 r_symmetry_hbond_refined 0.199 r_chiral_restr 0.101 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1660 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction