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Crystal structure of protein NMB1881 from Neisseria meningitidis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 289 K/Na Tartrate, CHES, Lithium sulfate, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.87 57.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.932 α = 90 b = 94.932 β = 90 c = 155.704 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97935 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 98.5 0.095 21.9 9.8 47392 46681 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.52 82.3 0.455 1.4 8.3 968
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 50 44271 44271 2366 98.49 0.20245 0.20245 0.19897 0.197 0.26793 0.2633 RANDOM 52.679
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.17 -3.17 6.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.486 r_dihedral_angle_3_deg 22.246 r_dihedral_angle_4_deg 18.953 r_dihedral_angle_1_deg 8.317 r_scangle_it 3.973 r_scbond_it 2.782 r_angle_refined_deg 2.26 r_mcangle_it 1.669 r_mcbond_it 1.325 r_nbtor_refined 0.333
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.486 r_dihedral_angle_3_deg 22.246 r_dihedral_angle_4_deg 18.953 r_dihedral_angle_1_deg 8.317 r_scangle_it 3.973 r_scbond_it 2.782 r_angle_refined_deg 2.26 r_mcangle_it 1.669 r_mcbond_it 1.325 r_nbtor_refined 0.333 r_nbd_refined 0.275 r_symmetry_vdw_refined 0.275 r_xyhbond_nbd_refined 0.253 r_symmetry_hbond_refined 0.162 r_chiral_restr 0.157 r_bond_refined_d 0.023 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7682 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing