☰ Navigation Tabs
The crystal structure of Class C acid phosphatase from Bacillus anthracis with tungstate bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 0.1 M HEPES
30% v/v Jeffamine DE-2001 reagent, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.1 41.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53 α = 90 b = 89.94 β = 90 c = 104.12 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 140 CCD NOIR-1 2005-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.0051 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47.23 100 0.11 8.4 7.15 34308 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.391 3.5 7.15 3361
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 47.23 3361 34245 1724 99.43 0.183 0.181 0.181 0.1909 0.224 0.2298 RANDOM 22.739
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.63 -1.32 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.916 r_dihedral_angle_4_deg 20.197 r_dihedral_angle_3_deg 13.116 r_dihedral_angle_1_deg 5.749 r_scangle_it 1.9 r_scbond_it 1.29 r_angle_refined_deg 1.179 r_angle_other_deg 0.8 r_mcangle_it 0.768 r_mcbond_it 0.478
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.916 r_dihedral_angle_4_deg 20.197 r_dihedral_angle_3_deg 13.116 r_dihedral_angle_1_deg 5.749 r_scangle_it 1.9 r_scbond_it 1.29 r_angle_refined_deg 1.179 r_angle_other_deg 0.8 r_mcangle_it 0.768 r_mcbond_it 0.478 r_metal_ion_refined 0.219 r_nbd_refined 0.211 r_nbtor_refined 0.178 r_nbd_other 0.169 r_symmetry_vdw_refined 0.165 r_symmetry_vdw_other 0.163 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.135 r_mcbond_other 0.113 r_nbtor_other 0.079 r_chiral_restr 0.07 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3729 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 12
Software Software Software Name Purpose d*TREK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction