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The structure of the Class C acid phosphatase from Bacillus anthracis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 0.1 M HEPES pH 7.0
30% v/v Jeffamine ED-2001 reagent, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.08 40.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.231 α = 90 b = 89.909 β = 90 c = 104.238 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 140 CCD NOIR-1 2005-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.2037 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 42.12 99.9 66821 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.66 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.57 42.12 66821 66730 3345 95.75 0.175 0.175 0.173 0.1846 0.207 0.2163 RANDOM 25.185
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 -0.75 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.192 r_dihedral_angle_4_deg 18.45 r_dihedral_angle_3_deg 11.545 r_dihedral_angle_1_deg 5.427 r_scangle_it 3.004 r_scbond_it 2.031 r_angle_refined_deg 1.318 r_mcangle_it 1.155 r_angle_other_deg 0.775 r_mcbond_it 0.752
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.192 r_dihedral_angle_4_deg 18.45 r_dihedral_angle_3_deg 11.545 r_dihedral_angle_1_deg 5.427 r_scangle_it 3.004 r_scbond_it 2.031 r_angle_refined_deg 1.318 r_mcangle_it 1.155 r_angle_other_deg 0.775 r_mcbond_it 0.752 r_nbd_refined 0.231 r_mcbond_other 0.216 r_symmetry_vdw_other 0.208 r_nbtor_refined 0.194 r_nbd_other 0.179 r_metal_ion_refined 0.152 r_xyhbond_nbd_refined 0.133 r_symmetry_hbond_refined 0.128 r_symmetry_vdw_refined 0.111 r_nbtor_other 0.084 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3727 Nucleic Acid Atoms Solvent Atoms 464 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction d*TREK data scaling d*TREK data reduction SOLVE phasing