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Bacteriorhodopsin/lipid complex, D96A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C3W PDB ENTRY 1C3W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 CUBIC LIPID PHASE 5.6 295 MO:WATER:PHOSPHATE, pH 5.60, CUBIC LIPID PHASE, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.8 47.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.952 α = 90 b = 60.952 β = 90 c = 109.326 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CDD ADSC QUANTUM 2005-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.97977 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 99.99 0.062 23.4 15618 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.09 99.9 0.756 2.9 15618
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R PDB ENTRY 1C3W 2 25 15552 15618 745 99.9 0.239 0.239 0.2379 0.1858 0.299 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 2067
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.074 s_angle_d 0.054 s_anti_bump_dis_restr 0.046 s_non_zero_chiral_vol 0.026 s_zero_chiral_vol 0.022 s_from_restr_planes 0.0166 s_bond_d 0.015 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1717 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 330
Software Software Software Name Purpose SHELX model building SHELXL-97 refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling SHELX phasing