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Crystal structure of aromatic amine dehydrogenase TTQ-formamide adduct
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 295 PEG 2000 MME, AMMONIUM SULPHATE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.33 47.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.662 α = 90 b = 88.415 β = 90.45 c = 80.034 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 40 99.8 0.07 0.07 8 3.6 192659
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.48 99.9 0.311 0.311 2.3 3.6 28110
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.4 15 192630 192630 9682 99.85 0.14 0.139 0.1404 0.165 0.1649 RANDOM 9.901
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.37 0.09 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.417 r_dihedral_angle_4_deg 11.832 r_dihedral_angle_3_deg 11.292 r_dihedral_angle_1_deg 7.102 r_scangle_it 3.127 r_scbond_it 2.067 r_angle_refined_deg 1.457 r_mcangle_it 1.316 r_mcbond_it 0.831 r_angle_other_deg 0.826
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.417 r_dihedral_angle_4_deg 11.832 r_dihedral_angle_3_deg 11.292 r_dihedral_angle_1_deg 7.102 r_scangle_it 3.127 r_scbond_it 2.067 r_angle_refined_deg 1.457 r_mcangle_it 1.316 r_mcbond_it 0.831 r_angle_other_deg 0.826 r_symmetry_vdw_other 0.244 r_mcbond_other 0.218 r_nbd_refined 0.209 r_nbd_other 0.198 r_nbtor_refined 0.18 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.148 r_nbtor_other 0.098 r_symmetry_vdw_refined 0.096 r_chiral_restr 0.093 r_xyhbond_nbd_other 0.045 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7478 Nucleic Acid Atoms Solvent Atoms 1700 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling