☰ Navigation Tabs
Crystal structures of a poxviral glutaredoxin in the oxidized and reduced states show redox-correlated structural changes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 295 20 % MPD, 0.1 M NaCacodylate pH 6.0, 5 mM DTT, 10 mM Tris pH 8.0, 100 mM sodium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.16 43.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.976 α = 90 b = 67.573 β = 90 c = 108.553 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-01-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 36.2 96.7 20896 20896 3.24 1.34
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 88
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 19.76 20896 20896 1045 96.7 0.18208 0.18208 0.18014 0.1935 0.21916 0.2303 RANDOM 18.256
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.778 r_dihedral_angle_3_deg 15.076 r_dihedral_angle_4_deg 14.707 r_dihedral_angle_1_deg 6.169 r_scangle_it 5.696 r_scbond_it 3.765 r_angle_other_deg 3.67 r_mcangle_it 2.543 r_angle_refined_deg 1.772 r_mcbond_it 1.519
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.778 r_dihedral_angle_3_deg 15.076 r_dihedral_angle_4_deg 14.707 r_dihedral_angle_1_deg 6.169 r_scangle_it 5.696 r_scbond_it 3.765 r_angle_other_deg 3.67 r_mcangle_it 2.543 r_angle_refined_deg 1.772 r_mcbond_it 1.519 r_symmetry_vdw_other 0.305 r_nbd_other 0.236 r_nbd_refined 0.227 r_symmetry_hbond_refined 0.189 r_symmetry_vdw_refined 0.159 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.122 r_nbtor_other 0.109 r_bond_refined_d 0.022 r_gen_planes_other 0.015 r_gen_planes_refined 0.009 r_bond_other_d r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1750 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction CCP4 data scaling XFIT data reduction