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Crystal structure of Rv0805 N97A mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 MPD, MgCl2, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.21 44.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.215 α = 90 b = 93.922 β = 90 c = 51.136 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm monochromator, mirrors 2006-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.2 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 51.16 99.8 0.132 9.5 5.5 13239 13212 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.306 99.9 0.917 5.5 882
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.25 51.16 13211 13182 1306 99.75 0.315 0.21 0.2101 0.268 0.2685 RANDOM 41.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.83 -1.83 5.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.096 r_dihedral_angle_4_deg 17.384 r_dihedral_angle_3_deg 16.524 r_dihedral_angle_1_deg 5.464 r_scangle_it 1.575 r_angle_refined_deg 1.241 r_scbond_it 1.137 r_mcangle_it 0.714 r_mcbond_it 0.421 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.096 r_dihedral_angle_4_deg 17.384 r_dihedral_angle_3_deg 16.524 r_dihedral_angle_1_deg 5.464 r_scangle_it 1.575 r_angle_refined_deg 1.241 r_scbond_it 1.137 r_mcangle_it 0.714 r_mcbond_it 0.421 r_nbtor_refined 0.3 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.156 r_xyhbond_nbd_refined 0.132 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_metal_ion_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1724 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction