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Crystal structure of Rv0805
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 MPD, MgCl2, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.21 44.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.263 α = 90 b = 94.299 β = 90 c = 50.916 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm monochromator, mirrors 2006-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.2 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 50.9 97.9 0.065 17.2 4.9 20597 20251 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 1.97 76.8 0.375 3.9 1050
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.932 50.9 20597 20228 2073 98.17 0.283 0.203 0.228 0.2981 RANDOM 28.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.4 -1.76 3.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.853 r_dihedral_angle_3_deg 14.408 r_dihedral_angle_4_deg 11.787 r_dihedral_angle_1_deg 5.005 r_scangle_it 1.19 r_angle_refined_deg 1.044 r_scbond_it 0.781 r_mcangle_it 0.477 r_nbtor_refined 0.295 r_mcbond_it 0.289
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.853 r_dihedral_angle_3_deg 14.408 r_dihedral_angle_4_deg 11.787 r_dihedral_angle_1_deg 5.005 r_scangle_it 1.19 r_angle_refined_deg 1.044 r_scbond_it 0.781 r_mcangle_it 0.477 r_nbtor_refined 0.295 r_mcbond_it 0.289 r_nbd_refined 0.175 r_symmetry_vdw_refined 0.148 r_symmetry_hbond_refined 0.13 r_xyhbond_nbd_refined 0.098 r_chiral_restr 0.068 r_bond_refined_d 0.008 r_metal_ion_refined 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1727 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 7
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction