☰ Navigation Tabs
Crystal structure of Cu(I) Azurin with the metal-binding loop sequence "CTFPGHSALM" replaced with "CSPHQGAGM", at pH3.5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 29-31% PEG 4000, 100mM magnesium chloride, 100mM Sodium acetate. Crystal soaked in ascorbate and pH3.5 buffer following growth, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.338 α = 90 b = 65.726 β = 90 c = 97.577 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS IV Qsmic "blue" 2006-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.542
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 35.56 99.9 0.081 0.081 21 6.2 12989 29.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.32 99.9 0.343 0.343 5.4 5.8 1849
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Direct use of Oxidised structure in same crystal form THROUGHOUT 2.21 35.56 12950 12950 649 99.6 0.202 0.202 0.199 0.267 0.2346 RANDOM 19.472
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 -1.74 1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.509 r_dihedral_angle_3_deg 13.927 r_dihedral_angle_1_deg 7.008 r_dihedral_angle_4_deg 6.372 r_scangle_it 2.088 r_scbond_it 1.422 r_angle_refined_deg 1.289 r_mcangle_it 1.016 r_mcbond_it 0.613 r_nbtor_refined 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.509 r_dihedral_angle_3_deg 13.927 r_dihedral_angle_1_deg 7.008 r_dihedral_angle_4_deg 6.372 r_scangle_it 2.088 r_scbond_it 1.422 r_angle_refined_deg 1.289 r_mcangle_it 1.016 r_mcbond_it 0.613 r_nbtor_refined 0.29 r_nbd_refined 0.185 r_symmetry_vdw_refined 0.153 r_xyhbond_nbd_refined 0.111 r_symmetry_hbond_refined 0.103 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1896 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 2
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection MOSFLM data reduction CCP4 data scaling