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Crystal structure of a putative thioesterase (pmt_2055) from prochlorococcus marinus str. mit 9313 at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 6.5 277 35.0% 2-ethoxyethanol, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.44 49.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.22 α = 90 b = 104.22 β = 90 c = 104.22 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2006-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 27.853 95.3 0.073 11.55 30132 25.327
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 82.8 0.74 1.9 4571
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 27.853 30131 1524 99.76 0.157 0.155 0.1642 0.182 0.1888 RANDOM 17.349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.018 r_dihedral_angle_4_deg 23.087 r_dihedral_angle_3_deg 11.886 r_scangle_it 7.26 r_dihedral_angle_1_deg 5.934 r_scbond_it 4.962 r_mcangle_it 2.957 r_mcbond_it 2.635 r_angle_refined_deg 1.728 r_angle_other_deg 1.379
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.018 r_dihedral_angle_4_deg 23.087 r_dihedral_angle_3_deg 11.886 r_scangle_it 7.26 r_dihedral_angle_1_deg 5.934 r_scbond_it 4.962 r_mcangle_it 2.957 r_mcbond_it 2.635 r_angle_refined_deg 1.728 r_angle_other_deg 1.379 r_mcbond_other 0.484 r_symmetry_vdw_other 0.314 r_nbd_refined 0.227 r_nbd_other 0.21 r_symmetry_vdw_refined 0.182 r_nbtor_refined 0.179 r_chiral_restr 0.162 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.146 r_nbtor_other 0.089 r_bond_refined_d 0.017 r_bond_other_d 0.011 r_gen_planes_refined 0.008 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1169 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 12
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing