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Structure of human SMG6 E1282C PIN domain mutant.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 291 20% Jeffamine 2000, 0.1M Hepes 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.31 46.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.36 α = 90 b = 73.34 β = 90 c = 37.309 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2005-10-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.542
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.9 0.04 6.9 15634 6.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 99.9 0.11 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 30 15628 14763 778 99.46 0.19708 0.19918 0.19708 0.2031 0.23883 0.2504 RANDOM 12.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 0.81 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.401 r_dihedral_angle_4_deg 17.744 r_dihedral_angle_3_deg 15.234 r_dihedral_angle_1_deg 6.003 r_scangle_it 3.558 r_scbond_it 2.388 r_mcbond_it 1.525 r_mcangle_it 1.358 r_angle_refined_deg 1.302 r_angle_other_deg 1.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.401 r_dihedral_angle_4_deg 17.744 r_dihedral_angle_3_deg 15.234 r_dihedral_angle_1_deg 6.003 r_scangle_it 3.558 r_scbond_it 2.388 r_mcbond_it 1.525 r_mcangle_it 1.358 r_angle_refined_deg 1.302 r_angle_other_deg 1.015 r_xyhbond_nbd_refined 0.589 r_symmetry_vdw_other 0.334 r_symmetry_vdw_refined 0.279 r_symmetry_hbond_refined 0.265 r_nbd_refined 0.219 r_nbd_other 0.206 r_chiral_restr 0.185 r_nbtor_refined 0.172 r_mcbond_other 0.16 r_symmetry_hbond_other 0.098 r_nbtor_other 0.081 r_xyhbond_nbd_other 0.079 r_bond_refined_d 0.011 r_bond_other_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1329 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing