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NMR Solution Structure of the nuclease domain from the Replicator Initiator Protein from porcine circovirus PCV2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_15N-separated_NOESY 0.8mM Rep2-116_PCV2 U-10% 13C;U-15N, 20 mM Sodium phosphate, 100mM NaCl, 1mM DTT, 8% D2O 8% D2O 0.264 6.6 ambient 298 2 HNHA 0.8mM Rep2-116_PCV2 U-10% 13C;U-15N, 20 mM Sodium phosphate, 100mM NaCl, 1mM DTT, 8% D2O 8% D2O 0.264 6.6 ambient 298 3 HNHB 0.8mM Rep2-116_PCV2 U-10% 13C;U-15N, 20 mM Sodium phosphate, 100mM NaCl, 1mM DTT, 8% D2O 8% D2O 0.264 6.6 ambient 298 4 4D_13C/15N-separated_NOESY 0.8mM Rep2-116_PCV2 U-13C; U-15N, 20 mM Sodium phosphate, 100mM NaCl, 1mM DTT 8% D2O 0.264 6.6 ambient 298 5 2D HNCOCG aromatic 0.8mM Rep2-116_PCV2 U-13C; U-15N, 20 mM Sodium phosphate, 100mM NaCl, 1mM DTT 8% D2O 0.264 6.6 ambient 298 6 2D HNCG aromatic 0.8mM Rep2-116_PCV2 U-13C; U-15N, 20 mM Sodium phosphate, 100mM NaCl, 1mM DTT 8% D2O 0.264 6.6 ambient 298 7 4D_13C-separated_NOESY 0.8mM Rep2-116_PCV2 U-13C;U-15N, 20 mM Sodium phosphate, 100mM NaCl, 1mM DTT 100% D2O 0.264 6.6 ambient 298 8 2D 1H-15N HSQC 0.8mM Rep2-116_PCV2 U-10% 13C;U-15N, 20 mM Sodium phosphate, 100mM NaCl, 1mM DTT, 100% D2O 100% D2O 0.264 6.6 ambient 298 9 1H-13C HSQC 0.8mM Rep2-116_PCV2 U-10% 13C;U-15N, 20 mM Sodium phosphate, 100mM NaCl, 1mM DTT, 100% D2O 100% D2O 0.264 6.6 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 700
NMR Refinement Method Details Software 30 conformers calculated using simulated anhealing in torsion angle space with CYANA2.0 (MODELS 2-31) & average structure after CYANA variable target function minimisation (MODEL 1) XwinNMR
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 300 Conformers Submitted Total Number 31 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.5 Bruker 2 data analysis NMRView 5.0.4 Bruce Johnson, One moon scientific 3 structure solution CYANA 2.0 Peter Guentert 4 processing NMRPipe X Frank Delaglio, NIH 5 data analysis TALOS X Frank Delaglio, NIH 6 refinement CYANA 2.0 Peter Guentert