☰ Navigation Tabs
ddCTP:O6MeG pair in the polymerase active site (0 position)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HHW pdb entry 2HHW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 290 55% saturated ammonium sulfate, 100 mM MES, 2.5% MPD, 10mM MnSO4, 10mM MgSO4, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.66 53.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.06 α = 90 b = 109.39 β = 90 c = 151.31 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD mirrors 2006-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.492 47.298 98.8 0.135 0.135 11.4 5.6 54569 54569 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.492 2.63 93.3 0.414 0.414 3.2 4.9 7420
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT pdb entry 2HHW 2.492 47.298 54569 54529 2765 98.75 0.204 0.201 0.2007 0.262 0.262 RANDOM 31.483
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 1.04 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.046 r_dihedral_angle_3_deg 12.757 r_dihedral_angle_4_deg 12.65 r_dihedral_angle_1_deg 3.662 r_scangle_it 1.821 r_angle_refined_deg 1.269 r_scbond_it 1.066 r_mcangle_it 0.822 r_mcbond_it 0.472 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.046 r_dihedral_angle_3_deg 12.757 r_dihedral_angle_4_deg 12.65 r_dihedral_angle_1_deg 3.662 r_scangle_it 1.821 r_angle_refined_deg 1.269 r_scbond_it 1.066 r_mcangle_it 0.822 r_mcbond_it 0.472 r_nbtor_refined 0.316 r_symmetry_hbond_refined 0.262 r_xyhbond_nbd_refined 0.212 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.199 r_chiral_restr 0.085 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9310 Nucleic Acid Atoms 810 Solvent Atoms 278 Heterogen Atoms 150
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection XDS data reduction CCP4 data scaling