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Crystal Structure of Adenylosuccinate Lyase from Plasmodium Vivax
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 1.7 M NH42SO4, 0.1 M Na Citrate, 0.2 M K/Na Tartrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.27 62.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.419 α = 90 b = 177.599 β = 99.16 c = 68.613 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.9795 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.7 0.092 0.092 10.4 3.8 62678 62489
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 100 0.229 0.212 6.03 3.8 6259
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 50 62489 59305 3170 99.39 0.21001 0.20919 0.20694 0.2047 0.25078 0.2476 RANDOM 31.342
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.16 0.3 -2.34 1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.781 r_dihedral_angle_3_deg 16.78 r_dihedral_angle_4_deg 16.306 r_dihedral_angle_1_deg 5.74 r_scangle_it 2.969 r_scbond_it 1.921 r_angle_refined_deg 1.342 r_mcangle_it 1.166 r_mcbond_it 0.714 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.781 r_dihedral_angle_3_deg 16.78 r_dihedral_angle_4_deg 16.306 r_dihedral_angle_1_deg 5.74 r_scangle_it 2.969 r_scbond_it 1.921 r_angle_refined_deg 1.342 r_mcangle_it 1.166 r_mcbond_it 0.714 r_nbtor_refined 0.299 r_symmetry_hbond_refined 0.202 r_symmetry_vdw_refined 0.201 r_nbd_refined 0.199 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7154 Nucleic Acid Atoms Solvent Atoms 564 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELX phasing RESOLVE phasing