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Crystal structure of GNPNAT1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 300 25% PEG4K, 0.2M NH4SO4, 0.1M Na Acetate pH4.6, 0.1M Yttrium Chloride, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.26 45.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.668 α = 90 b = 47.645 β = 123.52 c = 84.843 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU 2006-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 70.71 96.5 10107
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.67 2.8 94.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.67 70.71 10107 10107 510 98.77 0.2048 0.20011 0.1973 0.29841 0.2969 RANDOM 29.419
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.51 1.77 0.61 -1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.311 r_dihedral_angle_3_deg 18.665 r_dihedral_angle_4_deg 16.937 r_dihedral_angle_1_deg 6.649 r_scangle_it 1.562 r_angle_refined_deg 1.313 r_scbond_it 0.956 r_mcangle_it 0.767 r_mcbond_it 0.436 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.311 r_dihedral_angle_3_deg 18.665 r_dihedral_angle_4_deg 16.937 r_dihedral_angle_1_deg 6.649 r_scangle_it 1.562 r_angle_refined_deg 1.313 r_scbond_it 0.956 r_mcangle_it 0.767 r_mcbond_it 0.436 r_nbtor_refined 0.307 r_symmetry_hbond_refined 0.3 r_symmetry_vdw_refined 0.29 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2876 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing