2HUA

Solution Structure of CSFV IRES Domain IIa


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY1.5mM CSFV IRES domain IIa RNA U-15N,13C, 10mM phosphate buffer, 50mM sodium chloride100% D2O50mM sodium chloride6.0ambient298
23D HMQC TOCSY1.5mM CSFV IRES domain IIa RNA U-15N,13C, 10mM phosphate buffer, 50mM sodium chloride100% D2O50mM sodium chloride6.0ambient298
33D HCP1.5mM CSFV IRES domain IIa RNA U-15N,13C, 10mM phosphate buffer, 50mM sodium chloride100% D2O50mM sodium chloride6.0ambient298
42D HP-COSY1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride100% D2O50mM sodium chloride6.0ambient298
52D DQF-COSY1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride100% D2O50mM sodium chloride6.0ambient298
62D NOESY1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride100% D2O50mM sodium chloride6.0ambient298
72D HP-COSY1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride100% D2O50mM sodium chloride6.0ambient288
82D DQF-COSY1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride100% D2O50mM sodium chloride6.0ambient288
92D NOESY1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride100% D2O50mM sodium chloride6.0ambient288
102D S-NOESY1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride96% H2O, 4% D2O50mM sodium chloride6.0ambient288
112D S-NOESY1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride96% H2O, 4% D2O50mM sodium chloride6.0ambient278
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerDMX600
NMR Ensemble Information
Conformer Selection Criterialowest restraint violation and total energy
Conformers Calculated Total Number100
Conformers Submitted Total Number11
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was solved using triple resonance, multidimensional NMR spectroscopy and TROSY-type experiments to measure residual dipolar couplings
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLORXPLOR-NIHSchwieters, Kuszewski, Tjandra, Clore
2processingXwinNMR3.1Bruker
3data analysisSparky3Goddard, Kneller
4refinementPALES1Zweckstetter, Bax