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X-ray structure of the Archaeoglobus fulgidus CopZ N-terminal Domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 100 mM sodium acetate, 200 mM ammonium sulfate, 15-20% PEG 2000 MME, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.57 52.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.253 α = 90 b = 64.469 β = 90 c = 84.148 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-12-07 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2005-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.74 APS 23-ID-D 2 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.78 50 98.9 0.063 6.5 29750 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.74 1.824 93.3 0.451 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.78 51.16 2 30031 29690 1510 98.62 0.211 0.206 0.205 0.2008 0.221 0.2204 RANDOM 34.958
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.03 -0.02 -2.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.292 r_dihedral_angle_4_deg 16.576 r_dihedral_angle_3_deg 15.073 r_dihedral_angle_1_deg 5.382 r_scangle_it 4.71 r_scbond_it 2.86 r_mcangle_it 1.798 r_angle_refined_deg 1.455 r_mcbond_it 1.138 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.292 r_dihedral_angle_4_deg 16.576 r_dihedral_angle_3_deg 15.073 r_dihedral_angle_1_deg 5.382 r_scangle_it 4.71 r_scbond_it 2.86 r_mcangle_it 1.798 r_angle_refined_deg 1.455 r_mcbond_it 1.138 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.299 r_symmetry_hbond_refined 0.291 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.116 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2066 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing