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CTBP/BARS in ternary complex with NAD(H) and RRTGAPPAL peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HKU PDB ENTRY 1HKU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 2.0M ammonium formate, 0.1M Hepes (pH 7.5), VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.31 46.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.31 α = 90 b = 89.31 β = 90 c = 162.72 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 55.9 99.81 0.094 21.1 9503 9503 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.85 3 99.99 0.4 1.93 9.52 1341
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HKU 2.85 35 1 8533 8533 960 100 0.23172 0.23172 0.22685 0.2243 0.27491 0.2712 RANDOM 48.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.056 r_dihedral_angle_3_deg 15.021 r_dihedral_angle_4_deg 13.553 r_dihedral_angle_1_deg 4.839 r_angle_refined_deg 0.946 r_scangle_it 0.881 r_mcangle_it 0.554 r_scbond_it 0.497 r_mcbond_it 0.377 r_nbtor_refined 0.289
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.056 r_dihedral_angle_3_deg 15.021 r_dihedral_angle_4_deg 13.553 r_dihedral_angle_1_deg 4.839 r_angle_refined_deg 0.946 r_scangle_it 0.881 r_mcangle_it 0.554 r_scbond_it 0.497 r_mcbond_it 0.377 r_nbtor_refined 0.289 r_symmetry_vdw_refined 0.202 r_symmetry_hbond_refined 0.19 r_nbd_refined 0.162 r_xyhbond_nbd_refined 0.095 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2625 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing