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Crystal structure of a predicted phosphoglycolate phosphatase (hs_0176) from haemophilus somnus 129pt at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.9 277 0.2M NaAcetate, 20.0% PEG-3350, No Buffer pH 7.9, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.93 57.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.617 α = 90 b = 118.436 β = 90 c = 66.503 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2006-05-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97925,1.28281,0.97914 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.897 29.988 100 0.074 0.074 6.9 4.8 51412
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 100 0.653 0.653 1 3.7 3744
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 29.988 51362 2613 99.75 0.171 0.169 0.1749 0.205 0.2107 RANDOM 21.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 -0.7 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.888 r_dihedral_angle_4_deg 14.593 r_dihedral_angle_3_deg 12.907 r_scangle_it 6.555 r_dihedral_angle_1_deg 5.775 r_scbond_it 4.61 r_mcangle_it 2.831 r_mcbond_it 2.09 r_angle_refined_deg 1.495 r_angle_other_deg 0.948
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.888 r_dihedral_angle_4_deg 14.593 r_dihedral_angle_3_deg 12.907 r_scangle_it 6.555 r_dihedral_angle_1_deg 5.775 r_scbond_it 4.61 r_mcangle_it 2.831 r_mcbond_it 2.09 r_angle_refined_deg 1.495 r_angle_other_deg 0.948 r_mcbond_other 0.651 r_symmetry_vdw_other 0.256 r_nbd_refined 0.246 r_symmetry_hbond_refined 0.19 r_nbtor_refined 0.186 r_nbd_other 0.182 r_xyhbond_nbd_refined 0.166 r_symmetry_vdw_refined 0.115 r_chiral_restr 0.093 r_nbtor_other 0.086 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3517 Nucleic Acid Atoms Solvent Atoms 334 Heterogen Atoms 30
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling autoSHARP phasing