☰ Navigation Tabs
Crystal structure of a hepn domain containing protein (af_0298) from archaeoglobus fulgidus at 1.95 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 277 0.05M Li2SO4, 50.0% PEG-200, 0.1M TRIS, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.32 46.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.665 α = 90 b = 60.665 β = 90 c = 80.412 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD FLAT COLLIMATING MIRROR, TOROID FOCUSING MIRROR 2006-06-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97936,0.97918 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.336 100 0.09 0.09 14.3 7 11515 30.41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 100 0.925 0.925 2 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 29.34 11471 552 100 0.186 0.184 0.1938 0.21 0.2177 RANDOM 40.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.08 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.552 r_dihedral_angle_4_deg 18.019 r_dihedral_angle_3_deg 13.857 r_scangle_it 6.644 r_scbond_it 5.166 r_dihedral_angle_1_deg 4.521 r_mcangle_it 2.913 r_mcbond_it 2.134 r_angle_refined_deg 1.275 r_angle_other_deg 0.872
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.552 r_dihedral_angle_4_deg 18.019 r_dihedral_angle_3_deg 13.857 r_scangle_it 6.644 r_scbond_it 5.166 r_dihedral_angle_1_deg 4.521 r_mcangle_it 2.913 r_mcbond_it 2.134 r_angle_refined_deg 1.275 r_angle_other_deg 0.872 r_mcbond_other 0.45 r_symmetry_vdw_other 0.248 r_symmetry_vdw_refined 0.245 r_nbd_refined 0.216 r_nbtor_refined 0.181 r_nbd_other 0.179 r_xyhbond_nbd_refined 0.168 r_symmetry_hbond_refined 0.159 r_nbtor_other 0.084 r_chiral_restr 0.073 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1020 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 64
Software Software Software Name Purpose MolProbity model building SHARP phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing