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Crystal structure of a tpr-like protein (ct2138) from chlorobium tepidum tls at 2.54 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 7.5 277 25.0% Glycerol, 0.6M KH2PO4, 0.6M NaH2PO4, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.54 64.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.09 α = 90 b = 91.28 β = 90 c = 176.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2006-06-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837, 0.97936, 0.97920 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.54 29.696 90.9 0.073 8.08 2.18 47660 57.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.54 2.63 80.6 0.563 1.8 2.15 7287
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.54 29.696 47611 2415 98.87 0.205 0.204 0.2092 0.232 0.2356 RANDOM 58.893
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.19 0.88 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.423 r_dihedral_angle_3_deg 12.041 r_dihedral_angle_4_deg 11.606 r_scangle_it 3.8 r_scbond_it 2.673 r_dihedral_angle_1_deg 2.292 r_angle_refined_deg 1.171 r_mcangle_it 0.984 r_mcbond_it 0.888 r_angle_other_deg 0.857
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.423 r_dihedral_angle_3_deg 12.041 r_dihedral_angle_4_deg 11.606 r_scangle_it 3.8 r_scbond_it 2.673 r_dihedral_angle_1_deg 2.292 r_angle_refined_deg 1.171 r_mcangle_it 0.984 r_mcbond_it 0.888 r_angle_other_deg 0.857 r_mcbond_other 0.287 r_nbd_refined 0.203 r_nbtor_refined 0.174 r_symmetry_hbond_refined 0.152 r_symmetry_vdw_other 0.151 r_symmetry_vdw_refined 0.138 r_nbd_other 0.137 r_xyhbond_nbd_refined 0.132 r_nbtor_other 0.084 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_xyhbond_nbd_other 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7055 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 81
Software Software Software Name Purpose MolProbity model building SHARP phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing