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Crystal structure of Protein related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family) (NP_350077.1) from CLOSTRIDIUM ACETOBUTYLICUM at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7 277 0.2M Ca(OAc)2, 20.0% PEG-3000, 0.1M TRIS pH 7.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.07 40.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.85 α = 90 b = 36.79 β = 113.75 c = 97.97 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2006-06-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97934, 0.91837 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.235 93.1 0.064 7.87 19245 33.345
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 81.9 0.392 2 2980
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29.235 19244 985 99.59 0.193 0.19347 0.191 0.1975 0.242 0.2429 RANDOM 31.614
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.97 -0.5 3.14 -1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.026 r_dihedral_angle_4_deg 19.288 r_dihedral_angle_3_deg 15.859 r_scangle_it 7.717 r_dihedral_angle_1_deg 6.313 r_scbond_it 6.24 r_mcangle_it 3.575 r_mcbond_it 2.616 r_angle_refined_deg 1.41 r_angle_other_deg 0.832
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.026 r_dihedral_angle_4_deg 19.288 r_dihedral_angle_3_deg 15.859 r_scangle_it 7.717 r_dihedral_angle_1_deg 6.313 r_scbond_it 6.24 r_mcangle_it 3.575 r_mcbond_it 2.616 r_angle_refined_deg 1.41 r_angle_other_deg 0.832 r_mcbond_other 0.608 r_nbd_other 0.194 r_nbd_refined 0.188 r_nbtor_refined 0.188 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.175 r_symmetry_vdw_other 0.174 r_symmetry_hbond_refined 0.167 r_nbtor_other 0.091 r_chiral_restr 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2274 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 18
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction autoSHARP phasing