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Crystal Structure of ORF 1580 a hypothetical protein from Pyrococcus horikoshii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 HANGING DROP VAPOR DIFFUSION USING 1 MICROLITER DROPS CONTAINING EQUAL VOLUMES OF PROTEIN CONCENTRATE (12 mg/ml) AND RESERVOIR SOLUTION CONTAINinG 0.2M ammonium dihydrogen phosphate, 20% W/V PEG 3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.81 56.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.869 α = 90 b = 46.392 β = 132.42 c = 94.75 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Rosenbaum 2006-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.9790 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 70 99.1 0.075 11.6 6.9 29575 28050 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.99 2.04 92.3 0.293 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.99 20 28050 28017 1491 98.89 0.19654 0.19456 0.1898 0.23184 RANDOM 31.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -0.44 0.63 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.031 r_dihedral_angle_4_deg 25.648 r_dihedral_angle_3_deg 15.744 r_dihedral_angle_1_deg 8.583 r_scangle_it 4.298 r_scbond_it 2.891 r_mcangle_it 1.919 r_angle_refined_deg 1.699 r_mcbond_it 1.279 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.031 r_dihedral_angle_4_deg 25.648 r_dihedral_angle_3_deg 15.744 r_dihedral_angle_1_deg 8.583 r_scangle_it 4.298 r_scbond_it 2.891 r_mcangle_it 1.919 r_angle_refined_deg 1.699 r_mcbond_it 1.279 r_nbtor_refined 0.317 r_symmetry_vdw_refined 0.258 r_nbd_refined 0.237 r_xyhbond_nbd_refined 0.237 r_symmetry_hbond_refined 0.166 r_chiral_restr 0.135 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2689 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms
Software Software Software Name Purpose Sca2Structure model building REFMAC refinement SERGUI data collection HKL-2000 data reduction SCALEPACK data scaling SCA2STRUCTURE phasing