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Crystal Structure of the OXA-10 W154G mutant at pH 7.0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K4F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 293 Ammonium Sulfate 2.2 M, HEPES, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.44 49.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.11 α = 90 b = 125.4 β = 99.8 c = 92.36 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 46.47 99.2 0.122 11 3.3 28824 45.63
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 99.3 0.452 3.1 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1K4F 2.7 46.47 27307 1438 98.8 0.213 0.21 0.2116 0.267 0.2716 RANDOM 32.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.25 4.47 -4.25 2.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.216 r_dihedral_angle_3_deg 18.15 r_dihedral_angle_4_deg 12.439 r_dihedral_angle_1_deg 5.635 r_mcangle_it 2.563 r_scangle_it 2.152 r_mcbond_it 1.609 r_scbond_it 1.469 r_angle_refined_deg 1.075 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.216 r_dihedral_angle_3_deg 18.15 r_dihedral_angle_4_deg 12.439 r_dihedral_angle_1_deg 5.635 r_mcangle_it 2.563 r_scangle_it 2.152 r_mcbond_it 1.609 r_scbond_it 1.469 r_angle_refined_deg 1.075 r_nbtor_refined 0.298 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.184 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7475 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling AMoRE phasing