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Crystal structure of alliinase from garlic- apo form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 Hampton Crystal screen condition number 39, 0.1M Hepes pH 7.5, 2% v/v PEG 400 and 2.0M ammonium sulfate. The crystals took between 4 to 6 months to appear and grew to a maximum size of 0.1 x 0.1 x 0.1mm3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.77 55.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.118 α = 90 b = 81.118 β = 90 c = 164.017 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 double monochromator 2004-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9737 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 42 99.8 0.076 0.089 29.2 7.9 72527 72527 -3 22.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 100 0.52 0.52 2.4 7.9 3559
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 39.6 0.52 72527 72527 3663 99.88 0.164 0.164 0.163 0.234 0.179 0.2434 RANDOM 25.479
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 0.65 -1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.401 r_dihedral_angle_4_deg 16.613 r_dihedral_angle_3_deg 12.236 r_dihedral_angle_1_deg 6.415 r_scangle_it 2.52 r_scbond_it 1.911 r_angle_refined_deg 1.345 r_mcangle_it 0.938 r_angle_other_deg 0.884 r_mcbond_it 0.801
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.401 r_dihedral_angle_4_deg 16.613 r_dihedral_angle_3_deg 12.236 r_dihedral_angle_1_deg 6.415 r_scangle_it 2.52 r_scbond_it 1.911 r_angle_refined_deg 1.345 r_mcangle_it 0.938 r_angle_other_deg 0.884 r_mcbond_it 0.801 r_symmetry_vdw_other 0.238 r_nbd_refined 0.203 r_nbd_other 0.189 r_nbtor_refined 0.182 r_mcbond_other 0.164 r_symmetry_vdw_refined 0.15 r_xyhbond_nbd_refined 0.135 r_symmetry_hbond_refined 0.125 r_nbtor_other 0.091 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3427 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 120
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing