☰ Navigation Tabs
Crystal structure of the tetrameric pre-cleavage synaptic complex in the cre-loxp site-specific recombination
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CRX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 MPD, SODIUM ACETATE, CALCIUM CHLORIDE, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.97 58.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.784 α = 90 b = 136.784 β = 90 c = 218.275 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 MONOCHROMATOR 2003-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.078 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.601 19.92 81.49 0.09 72945 59441
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.601 81.64 0.198
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1CRX 2.601 19.92 72945 59441 3007 81.49 0.2227 0.2227 0.184 0.187 0.246 0.2469 RANDOM 30.818
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.021 r_dihedral_angle_3_deg 16.786 r_dihedral_angle_4_deg 14.757 r_dihedral_angle_1_deg 4.628 r_scangle_it 1.388 r_angle_refined_deg 1.06 r_scbond_it 0.781 r_mcangle_it 0.648 r_mcbond_it 0.363 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.021 r_dihedral_angle_3_deg 16.786 r_dihedral_angle_4_deg 14.757 r_dihedral_angle_1_deg 4.628 r_scangle_it 1.388 r_angle_refined_deg 1.06 r_scbond_it 0.781 r_mcangle_it 0.648 r_mcbond_it 0.363 r_nbtor_refined 0.292 r_symmetry_vdw_refined 0.203 r_nbd_refined 0.174 r_xyhbond_nbd_refined 0.136 r_symmetry_hbond_refined 0.101 r_chiral_restr 0.062 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10184 Nucleic Acid Atoms 2805 Solvent Atoms 822 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction AMoRE phasing