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The crystal structure of genomics APC5867
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 297 0.1M Bis-Tris pH 6.0, 1.5M Ammonium Sulphate, VAPOR DIFFUSION, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2 38.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.555 α = 90 b = 50.391 β = 90 c = 81.369 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ VeriMax Cr 2006-04-24 M SINGLE WAVELENGTH 2 1 100 IMAGE PLATE RIGAKU RAXIS IV++ VeriMax HR 2006-05-10
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 2.29 2 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 94.5 0.037 0.037 30 6.8 23511 23511 18.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 57 0.1 0.1 9.4 2.9 690
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Sulfur SAD THROUGHOUT 1.6 42.84 22713 22713 748 94.52 0.17435 0.17435 0.17313 0.1722 0.21352 0.2128 RANDOM 17.875
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.36 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.42 r_dihedral_angle_4_deg 24.223 r_dihedral_angle_3_deg 13.383 r_dihedral_angle_1_deg 10.252 r_scangle_it 3.057 r_scbond_it 2.03 r_angle_refined_deg 1.372 r_mcangle_it 1.358 r_mcbond_it 0.908 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.42 r_dihedral_angle_4_deg 24.223 r_dihedral_angle_3_deg 13.383 r_dihedral_angle_1_deg 10.252 r_scangle_it 3.057 r_scbond_it 2.03 r_angle_refined_deg 1.372 r_mcangle_it 1.358 r_mcbond_it 0.908 r_nbtor_refined 0.311 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.173 r_xyhbond_nbd_refined 0.119 r_symmetry_hbond_refined 0.114 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1585 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing RESOLVE phasing