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Crystal Structure of the Extracellular Domain of the Type II BMP Receptor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 290 0.1M Na Citrate, 25% PEG2000 MME, 0.8M Sodium Formate, pH 6.0, vapor diffusion, hanging drop, temperature 290K
Crystal Properties Matthews coefficient Solvent content 1.67 26.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.063 α = 90 b = 35.063 β = 90 c = 121.057 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD MARRESEARCH 2006-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97946 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 24.29 98.1 0.091 15.2 29.5 23947
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.232 88.2 0.585 13.6 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.2 24.29 24597 23343 1254 99.89 0.22061 0.22018 0.2242 0.2291 0.2284 RANDOM 15.349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.09 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.938 r_dihedral_angle_4_deg 13.816 r_dihedral_angle_3_deg 10.917 r_dihedral_angle_1_deg 6.707 r_rigid_bond_restr 4.585 r_sphericity_bonded 3.973 r_sphericity_free 3.801 r_scangle_it 2.851 r_scbond_it 2.788 r_mcangle_it 1.742
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.938 r_dihedral_angle_4_deg 13.816 r_dihedral_angle_3_deg 10.917 r_dihedral_angle_1_deg 6.707 r_rigid_bond_restr 4.585 r_sphericity_bonded 3.973 r_sphericity_free 3.801 r_scangle_it 2.851 r_scbond_it 2.788 r_mcangle_it 1.742 r_mcbond_it 1.44 r_angle_refined_deg 1.214 r_angle_other_deg 0.756 r_mcbond_other 0.552 r_symmetry_hbond_refined 0.291 r_symmetry_vdw_refined 0.254 r_nbd_refined 0.211 r_nbd_other 0.191 r_nbtor_refined 0.187 r_symmetry_vdw_other 0.162 r_xyhbond_nbd_refined 0.13 r_nbtor_other 0.085 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 533 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHARP phasing