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Crystal structure of the A49M mutant CAP-Gly domain of human Dynactin-1 (p150-Glued) in complex with human EB1 C-terminal hexapeptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 298 25% PEG 3350, 0.05M Sodium Citrate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.82 32.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.062 α = 90 b = 55.068 β = 90 c = 66.221 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH Osmic mirrors 2005-01-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 42.33 98 10303 10303 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.085 92.17
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.03 42.33 9814 9814 488 97.03 0.18483 0.18302 0.1914 0.22339 0.2296 RANDOM 27.088
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.35 -0.49 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.204 r_dihedral_angle_4_deg 16.918 r_dihedral_angle_3_deg 14.567 r_scangle_it 7.15 r_dihedral_angle_1_deg 5.551 r_scbond_it 4.825 r_mcangle_it 3.12 r_mcbond_it 1.959 r_angle_refined_deg 1.209 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.204 r_dihedral_angle_4_deg 16.918 r_dihedral_angle_3_deg 14.567 r_scangle_it 7.15 r_dihedral_angle_1_deg 5.551 r_scbond_it 4.825 r_mcangle_it 3.12 r_mcbond_it 1.959 r_angle_refined_deg 1.209 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.203 r_nbd_refined 0.189 r_symmetry_hbond_refined 0.152 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.076 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1169 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing