2HKR

Structures of the carbinolamine and schiff-base intermediates in the reductive half-reaction of aromatic amine dehydrogenase (AADH) with p-methoxyphenylethylamine


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6292PEG 2000 MME, AMMONIUM SULPHATE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.3547.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.848α = 90
b = 88.813β = 90.39
c = 80.044γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mmMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.93ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.430189477

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.41518939295101000.1510.1490.171RANDOM13.54
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.12-0.5-0.130.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.332
r_dihedral_angle_4_deg12.557
r_dihedral_angle_3_deg10.696
r_dihedral_angle_1_deg7.293
r_scangle_it4.691
r_scbond_it3.339
r_mcangle_it2.157
r_mcbond_it1.8
r_angle_refined_deg1.261
r_angle_other_deg0.758
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.332
r_dihedral_angle_4_deg12.557
r_dihedral_angle_3_deg10.696
r_dihedral_angle_1_deg7.293
r_scangle_it4.691
r_scbond_it3.339
r_mcangle_it2.157
r_mcbond_it1.8
r_angle_refined_deg1.261
r_angle_other_deg0.758
r_mcbond_other0.538
r_symmetry_vdw_other0.22
r_nbd_refined0.214
r_nbd_other0.196
r_nbtor_refined0.179
r_symmetry_hbond_refined0.155
r_xyhbond_nbd_refined0.138
r_symmetry_vdw_refined0.115
r_nbtor_other0.098
r_chiral_restr0.082
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7360
Nucleic Acid Atoms
Solvent Atoms1383
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
SCALAdata scaling