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Structures of the carbinolamine and schiff-base intermediates in the reductive half-reaction of aromatic amine dehydrogenase (AADH) with p-methoxyphenylethylamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 PEG 2000 MME, AMMONIUM SULPHATE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.35 47.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.848 α = 90 b = 88.813 β = 90.39 c = 80.044 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 30 189477
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.4 15 189392 9510 100 0.151 0.149 0.1501 0.171 0.1725 RANDOM 13.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.5 -0.13 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.332 r_dihedral_angle_4_deg 12.557 r_dihedral_angle_3_deg 10.696 r_dihedral_angle_1_deg 7.293 r_scangle_it 4.691 r_scbond_it 3.339 r_mcangle_it 2.157 r_mcbond_it 1.8 r_angle_refined_deg 1.261 r_angle_other_deg 0.758
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.332 r_dihedral_angle_4_deg 12.557 r_dihedral_angle_3_deg 10.696 r_dihedral_angle_1_deg 7.293 r_scangle_it 4.691 r_scbond_it 3.339 r_mcangle_it 2.157 r_mcbond_it 1.8 r_angle_refined_deg 1.261 r_angle_other_deg 0.758 r_mcbond_other 0.538 r_symmetry_vdw_other 0.22 r_nbd_refined 0.214 r_nbd_other 0.196 r_nbtor_refined 0.179 r_symmetry_hbond_refined 0.155 r_xyhbond_nbd_refined 0.138 r_symmetry_vdw_refined 0.115 r_nbtor_other 0.098 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7360 Nucleic Acid Atoms Solvent Atoms 1383 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling