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Crystal structure of the Schiff base intermediate in the reductive half-reaction of aromatic amine dehydrogenase (AADH) with phenylethylamine.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 PEG 2000 MME, AMMONIUM SULPHATE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.3 46.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.398 α = 90 b = 89.109 β = 90.47 c = 80.082 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 52.632 98.9 0.093 0.093 5 3.4 155952
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.38 99.9 0.42 0.42 1.5 3.3 22949
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.5 15 155862 155862 7817 98.85 0.161 0.159 0.1605 0.191 0.192 RANDOM 17.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 -0.28 -0.09 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.876 r_dihedral_angle_4_deg 13.747 r_dihedral_angle_3_deg 11.629 r_dihedral_angle_1_deg 7.294 r_scangle_it 5.172 r_scbond_it 4.013 r_mcangle_it 2.668 r_mcbond_it 2.214 r_angle_refined_deg 1.257 r_angle_other_deg 0.734
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.876 r_dihedral_angle_4_deg 13.747 r_dihedral_angle_3_deg 11.629 r_dihedral_angle_1_deg 7.294 r_scangle_it 5.172 r_scbond_it 4.013 r_mcangle_it 2.668 r_mcbond_it 2.214 r_angle_refined_deg 1.257 r_angle_other_deg 0.734 r_mcbond_other 0.713 r_symmetry_vdw_refined 0.25 r_symmetry_vdw_other 0.242 r_symmetry_hbond_refined 0.204 r_nbd_refined 0.198 r_nbd_other 0.196 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.145 r_nbtor_other 0.097 r_chiral_restr 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7351 Nucleic Acid Atoms Solvent Atoms 1282 Heterogen Atoms 18
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction