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The structure of a probable aspartate-semialdehyde dehydrogenase from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 292 0.2M Ammonium Citrate, 0.1M HEPES pH7.4, 18% PEG 3350, 4% Dioxane, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.7 66.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 177.438 α = 90 b = 177.438 β = 90 c = 58.173 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-07-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97948, 0.97962 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 48.6 99.5 26238 26238 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 91.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 48.65 26238 26238 1390 99.58 0.17901 0.17748 0.1861 0.20888 0.2122 RANDOM 73.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9 0.45 0.9 -1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.777 r_dihedral_angle_3_deg 16.672 r_dihedral_angle_4_deg 16.158 r_dihedral_angle_1_deg 6.082 r_scangle_it 3.316 r_scbond_it 2.076 r_angle_refined_deg 1.422 r_mcangle_it 1.373 r_mcbond_it 0.85 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.777 r_dihedral_angle_3_deg 16.672 r_dihedral_angle_4_deg 16.158 r_dihedral_angle_1_deg 6.082 r_scangle_it 3.316 r_scbond_it 2.076 r_angle_refined_deg 1.422 r_mcangle_it 1.373 r_mcbond_it 0.85 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.236 r_symmetry_hbond_refined 0.222 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.097 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2468 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement HKL-3000 phasing SHELX phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing O model building Coot model building ARP/wARP model building