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Structural and functional analysis of Saccharomyces cerevisiae Mob1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 1.2M ammonium sulfate, 0.1M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.05 39.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.75 α = 90 b = 70.811 β = 119.35 c = 50.622 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-04-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 0.9795, 0.9792, 0.9600 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 99.5 0.068 18.4 5.3 14415
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.05 95 0.278 2.9 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 35 14415 748 99.77 0.20421 0.20421 0.20246 0.2004 0.23747 0.2384 RANDOM 24.188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.17 -1.18 0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.919 r_dihedral_angle_4_deg 21.285 r_dihedral_angle_3_deg 15.579 r_dihedral_angle_1_deg 5.607 r_scangle_it 4.402 r_scbond_it 2.966 r_mcangle_it 1.825 r_angle_refined_deg 1.76 r_mcbond_it 1.214 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.919 r_dihedral_angle_4_deg 21.285 r_dihedral_angle_3_deg 15.579 r_dihedral_angle_1_deg 5.607 r_scangle_it 4.402 r_scbond_it 2.966 r_mcangle_it 1.825 r_angle_refined_deg 1.76 r_mcbond_it 1.214 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.24 r_symmetry_hbond_refined 0.227 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.164 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1658 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHARP phasing