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Crystal structure of Alcaligenes faecalis AADH complex with p-nitrobenzylamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 PEG 2000 MME, AMMONIUM SULPHATE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.43 49.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.254 α = 90 b = 96.544 β = 90 c = 120.632 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2005-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.933 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 15 99178
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.8 15 99178 94505 4725 95.49 0.161 0.161 0.159 0.169 0.205 0.2122 5% at RANDOM 21.033
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.79 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.902 r_dihedral_angle_3_deg 12.538 r_dihedral_angle_4_deg 12.463 r_dihedral_angle_1_deg 7.093 r_scangle_it 6.164 r_scbond_it 4.435 r_mcangle_it 3.079 r_mcbond_it 2.322 r_angle_refined_deg 1.391 r_mcbond_other 0.871
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.902 r_dihedral_angle_3_deg 12.538 r_dihedral_angle_4_deg 12.463 r_dihedral_angle_1_deg 7.093 r_scangle_it 6.164 r_scbond_it 4.435 r_mcangle_it 3.079 r_mcbond_it 2.322 r_angle_refined_deg 1.391 r_mcbond_other 0.871 r_angle_other_deg 0.803 r_symmetry_vdw_other 0.242 r_nbd_refined 0.236 r_symmetry_vdw_refined 0.199 r_nbd_other 0.19 r_nbtor_refined 0.177 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.149 r_xyhbond_nbd_other 0.13 r_nbtor_other 0.094 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7342 Nucleic Acid Atoms Solvent Atoms 1181 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling