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The structure of conserved bacterial protein SP0830 from Streptococcus pneumoniae.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 289 0.1M Tris pH8.5, 0.2M MgCl2, 25% PEG 3000, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.62 53.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.252 α = 90 b = 108.845 β = 97.15 c = 65.527 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-12-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97906, 0.97923 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 48.28 98.23 160902 160902 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 94.4 2 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.4 48.28 160902 160902 8487 98.23 0.16427 0.16427 0.16269 0.161 0.19439 0.1922 RANDOM 20.701
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 0.05 -0.49 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.709 r_dihedral_angle_4_deg 17.19 r_dihedral_angle_3_deg 13.158 r_dihedral_angle_1_deg 5.436 r_scangle_it 3.587 r_scbond_it 2.535 r_mcangle_it 1.506 r_angle_refined_deg 1.42 r_mcbond_it 1.01 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.709 r_dihedral_angle_4_deg 17.19 r_dihedral_angle_3_deg 13.158 r_dihedral_angle_1_deg 5.436 r_scangle_it 3.587 r_scbond_it 2.535 r_mcangle_it 1.506 r_angle_refined_deg 1.42 r_mcbond_it 1.01 r_nbtor_refined 0.314 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.168 r_symmetry_vdw_refined 0.147 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.106 r_metal_ion_refined 0.054 r_bond_refined_d 0.012 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5950 Nucleic Acid Atoms Solvent Atoms 1657 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELX phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing O model building Coot model building ARP/wARP model building