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Crystal structure of DsbA-DsbB-ubiquinone complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 JeffamimeED2001, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 5.471755 77.52092
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.5 α = 90 b = 165.5 β = 90 c = 65.92 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker DIP-6040 Rh-coated mirror 2005-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.90000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.7 61.2 99.4 0.06 18.7 6.9 10332 -4 140.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.7 3.9 99.8 0.527 3.8 7.1 1450
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 3.7 20 9622 488 99.46 0.34221 0.34124 0.3401 0.36154 0.3092 RANDOM 185.155
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.99 7.99 -15.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.743 r_dihedral_angle_3_deg 24.247 r_dihedral_angle_4_deg 22.466 r_dihedral_angle_1_deg 8.381 r_scangle_it 1.602 r_angle_refined_deg 1.556 r_mcangle_it 1.355 r_scbond_it 0.946 r_mcbond_it 0.784 r_nbtor_refined 0.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.743 r_dihedral_angle_3_deg 24.247 r_dihedral_angle_4_deg 22.466 r_dihedral_angle_1_deg 8.381 r_scangle_it 1.602 r_angle_refined_deg 1.556 r_mcangle_it 1.355 r_scbond_it 0.946 r_mcbond_it 0.784 r_nbtor_refined 0.332 r_symmetry_vdw_refined 0.317 r_nbd_refined 0.293 r_xyhbond_nbd_refined 0.245 r_chiral_restr 0.099 r_symmetry_hbond_refined 0.076 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2556 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing