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Crystal structure of the human small CTD phosphatase 3 isoform 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TA0 PDB ENTRY 1TA0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 295 0.2M lithium sulfate monohydrate, 0.1M bis-tris, 25% w/v PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.35 47.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.419 α = 90 b = 49.857 β = 96.9 c = 179.747 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 1.74 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 87.7 0.056 0.056 8.5 1.7 47666 26.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 74 0.265 1.4 7128
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1TA0 2.1 19.86 49147 47398 2386 96.44 0.191 0.191 0.188 0.1887 0.252 0.2519 RANDOM 26.238
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.668 r_dihedral_angle_4_deg 21.878 r_dihedral_angle_3_deg 14.441 r_dihedral_angle_1_deg 6.636 r_scangle_it 3.786 r_angle_refined_deg 3.199 r_scbond_it 2.754 r_mcangle_it 1.774 r_mcbond_it 1.113 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.668 r_dihedral_angle_4_deg 21.878 r_dihedral_angle_3_deg 14.441 r_dihedral_angle_1_deg 6.636 r_scangle_it 3.786 r_angle_refined_deg 3.199 r_scbond_it 2.754 r_mcangle_it 1.774 r_mcbond_it 1.113 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.252 r_nbd_refined 0.224 r_xyhbond_nbd_refined 0.208 r_chiral_restr 0.184 r_symmetry_hbond_refined 0.175 r_bond_refined_d 0.022 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5774 Nucleic Acid Atoms Solvent Atoms 540 Heterogen Atoms 158
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction