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Structure of Protein of Unknown Function RPA3614, Possible Tyrosine Phosphatase, from Rhodopseudomonas palustris CGA009
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 1.4M Na Citrate, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.88 34.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.118 α = 90 b = 42.505 β = 105.19 c = 42.251 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD SBC-2 2006-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97945 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 95.84 33695 32294 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.24 28.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.2 40.79 2 33695 32294 1699 95.84 0.2027 0.19256 0.19175 0.1849 0.2082 RANDOM 13.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.75 -0.26 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.241 r_dihedral_angle_4_deg 15.308 r_dihedral_angle_3_deg 9.733 r_dihedral_angle_1_deg 4.924 r_scangle_it 2.657 r_scbond_it 1.673 r_angle_refined_deg 1.105 r_mcangle_it 1.06 r_mcbond_it 0.545 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.241 r_dihedral_angle_4_deg 15.308 r_dihedral_angle_3_deg 9.733 r_dihedral_angle_1_deg 4.924 r_scangle_it 2.657 r_scbond_it 1.673 r_angle_refined_deg 1.105 r_mcangle_it 1.06 r_mcbond_it 0.545 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.204 r_nbd_refined 0.187 r_symmetry_hbond_refined 0.118 r_metal_ion_refined 0.098 r_xyhbond_nbd_refined 0.089 r_chiral_restr 0.07 r_symmetry_metal_ion_refined 0.015 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 998 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement HKL-3000 phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building