2HG6
Solution NMR Structure of Protein PA1123 from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium Target PaT4; Ontario Centre for Structural Proteomics Target PA1123.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D N15/13C time shared NOESY | 1mM Protein, U-15N,13C; 10 mM Phosphate Buffer;400mM NaCl;10mM DTT; 0.01% NaN3; 1mM Benzamidine; 1X protease; inhibitor cocktail; 95% H2O+5% D2O | 95% H2O/5% D2O | 400 mM NaCl, 10 mM Phosphate | 6.5 | ambient | 300 | |
2 | 3D_13C-separated_NOESY | Phosphate Buffer;400mM NaCl;10mM DTT; 0.01% NaN3; 1mM Benzamidine; 1X protease inhibitor cocktail; 100% D2O | 100% D2O | 400 mM NaCl, 10 mM Phosphate | 6.5 | ambient | 300 | |
3 | 4D_13C-separated_NOESY | Phosphate Buffer;400mM NaCl;10mM DTT; 0.01% NaN3; 1mM Benzamidine; 1X protease inhibitor cocktail; 100% D2O | 100% D2O | 400 mM NaCl, 10 mM Phosphate | 6.5 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | 1887 NOE distance constraints 22 Hydrogen bond constraints 122 Angle restraints | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations,lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.3 | Delaglio, F. etal |
2 | data analysis | Sparky | 3.106 | Goddar, T.D. and Kneller, D.G. UCSF |
3 | structure solution | CYANA | 2.1 | Gunter, P. |
4 | refinement | CNS | 1.1 | Brunger, A.T. etal |