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Crystal structure of RNA dependant RNA polymerase domain of West Nile virus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 5% PEG 10000,
0.2 M Imidazole Malate, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.06 59.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.991 α = 90 b = 109.991 β = 90 c = 69.097 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9340 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 35 99.8 0.069 18.4 5.7 28709 66.68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.567 2.9 5.8 24051
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 33.88 28709 27231 1453 99.82 0.20779 0.20779 0.20585 0.2453 0.24316 RANDOM 54.907
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.49 -1.49 2.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.845 r_dihedral_angle_3_deg 21.44 r_dihedral_angle_4_deg 21.008 r_dihedral_angle_1_deg 6.628 r_scangle_it 2.882 r_scbond_it 1.887 r_angle_refined_deg 1.723 r_mcangle_it 1.37 r_mcbond_it 0.793 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.845 r_dihedral_angle_3_deg 21.44 r_dihedral_angle_4_deg 21.008 r_dihedral_angle_1_deg 6.628 r_scangle_it 2.882 r_scbond_it 1.887 r_angle_refined_deg 1.723 r_mcangle_it 1.37 r_mcbond_it 0.793 r_nbtor_refined 0.313 r_nbd_refined 0.227 r_symmetry_vdw_refined 0.223 r_symmetry_hbond_refined 0.204 r_metal_ion_refined 0.174 r_xyhbond_nbd_refined 0.172 r_chiral_restr 0.129 r_bond_refined_d 0.022 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3936 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction XPREP data reduction