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Structure of the A. fulgidus CopA A-domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 100mM Tris, 1.8 M ammonium sulfate, 7.5% glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.61 52.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.273 α = 90 b = 29.372 β = 110.46 c = 39.972 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.0 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 28.273 97.5 0.083 0.083 3.9 6.9 14467 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.74 85 0.389 0.389 1.7 5.5 1815
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 30 14467 751 97.39 0.202 0.205 0.2 0.1979 0.228 0.2226 RANDOM 28.394
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.28 -0.28 -0.53 2.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.205 r_dihedral_angle_4_deg 15.24 r_dihedral_angle_3_deg 11.911 r_dihedral_angle_1_deg 5.507 r_scangle_it 4.48 r_scbond_it 2.785 r_mcangle_it 1.592 r_angle_refined_deg 1.402 r_mcbond_it 1.093 r_symmetry_hbond_refined 0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.205 r_dihedral_angle_4_deg 15.24 r_dihedral_angle_3_deg 11.911 r_dihedral_angle_1_deg 5.507 r_scangle_it 4.48 r_scbond_it 2.785 r_mcangle_it 1.592 r_angle_refined_deg 1.402 r_mcbond_it 1.093 r_symmetry_hbond_refined 0.46 r_nbtor_refined 0.297 r_symmetry_vdw_refined 0.275 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.089 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 821 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction CCP4 data scaling SOLVE phasing